Working Document Series Open Access 2010 RUF-34597

Testing the efficacy of artificial microRNAs to control cassava brown streak disease

T. AlicaiY. BagumaClaude M. FauquetSettumba B. MukasaBasavaprabhu L. PatilNigel J. TaylorHenry WagabaJitender S. Yadav

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Abstract

204 words

Cassava brown streak disease (CBSD) is a major constraint to cassava production in East Africa. It is caused by at least two single stranded (+) RNA viruses (CBSV and CBSUV). To date, only a few genetic sources of resistance to the disease in cassava are known. Artificial microRNAs (amiRNAs) have in the recent been employed to control plant viruses. In this study, 21 nt of the A. thaliana pre-mi159a were replaced with 21 nt conserved sequences selected across the CBSV and CBSUV genomes, generating 11 amiRNA constructs targeting different CBSV genes (P1 {CBSV-Ug and CBSV-Tz}, P3, CI, NIb, CP and 3’UTR).The modified precursors were then sub-cloned in a shuttle vector CGT11003-I and subsequently cloned into a binary vector AKK1420 with an RNAi cassette targeting the green fluorescent protein (GFP), as an internal silencing control. Transient studies of these amiRNA constructs in transgenic N. benthamiana (16C) using Agrobacterium (GV3001 strain), showed that constructs targeting CBSV-P1, CBSUV-P1, NIb, CP and UTR expressed miRNAs specific to their target nucleotides of CBSUV. Transient protection studies showed varied levels of resistance to the homologous virus roughly corresponding to the level of siRNA accumulation using Northern analysis. Artificial microRNAs (amiRNA) therefore have the potential to control the spread of CBSUV.

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